I soldered all grounds together and then that to the negative battery terminal, and just connected in/out to respective jacks. So far as I can tell the electrolytics are correctly orientated and I have no idea why that resistor is so small, but I'm pretty sure it measures 10M on the multimeter (100 on 2000k setting, correct me if I'm wrong, this is all new to me). The solder blob is because the legs of that specific cap were really short so i had to solder a resistor leg to it to make it long enough.
From the layout the diode is correctly orientated, however it is a 500mW 9v1 compared to the 1W 9v1 that is specified, I'm not sure if that makes a difference or not.