I built the second layout (w/ tone stack) a while back and it didn't work properly. The rate and LFO knobs seem to be working. I hear a drone-y synth noise that changes in time (Rate pot) and in intensity (LFO pot) as I turn them, but no guitar signal is getting through at all. I spent an hour going over my build vs. the layout, the only things I found out of place or funky were a couple of messy trace cuts. I went ahead and re-knifed the tracks, as well as all of the trace cuts... Still the same drone-y synth noise that changes in time (Rate pot) and in intensity (LFO pot) as I turn them.
I just spent another hour or so probing it, and I keep losing the guitar signal after pin 3 of LM386.
I re-flowed the solder, re-knifed, put in fresh chips. I tried two different brands of LM386 chips, as well as versions LM386-3 & LM386-4, just for fun. As an aside, I noticed the drone-y synth noise sounded a little bit different with each version of the chip.
This is such a cool circuit, I want to figure this out! I might have to mess with that 100nf cap. I'll put it to rest for today but I'm definitely going to re-visit it again one day.