The layout does deviate a little from the schematic in other ways, e.g. the large 470 uF should have a small resistor ahead of it and some diodes, presumably to remove ripple from the incoming 9V power. As it stands, the charge pump design should work fine. If you are ever wondering, you can consult the data sheets for the charge pumps, which have the typical application schematics for a voltage doubler, split voltage supply, etc.
icl7660s:
http://www.intersil.com/content/dam/intersil/documents/icl7/icl7660s-a.pdfmax1044:
http://pdfserv.maximintegrated.com/en/ds/ICL7660-MAX1044.pdftc1044:
http://ww1.microchip.com/downloads/en/DeviceDoc/21348a.pdf