The other problem with the 1N400x diodes is that when it's series protection the voltage drop with them will be around 0.7V instead of maybe 0.4V with the 1N5817, so it takes more away from the supply. That is the main reason I used the 5817's in so many layouts.
If the protection is parallel then the voltage drop isn't an issue. But the downside is the diode will blow up if you reverse the polarity and take out your board