I know this doesn't help with the layout but if you really wanted this pedal how about this Behringer UV300 Ultra Vibrato Pedal for about £20 and give it some modding.
I actually bought a Waza Craft VB-2. It's awesome, but I wanted to build my own as well. I bought the Behringer previously, but IMO it's not that same sound. Close, but doesn't cut through as nicely. Thanks for the suggestion nonetheless!
I suppose you could change to a bigger pot. A 500K one would give you more control without loosing the high speed.
I also suppose you could experiment with R54 (4K7 going to pot 3). Increasing the value will get you a overall slower rate.